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SCHEDULE

Agenda

7:00 am - 4:30 pm

Location - Goizueta Business School 208

1300 Clifton Road, Atlanta, GA 30322

7:00 am - 8:00 am

Continental Breakfast & Registration

8:00 am - 8:30 am

Introduction & Welcome

Brief welcome to the summer school, outline expectations and basic rules, provide information on facilities, and transition to the ice breaker.

Hari Trivedi
Hari Trivedi

Emory University

Judy Gichoya
Judy Gichoya

Emory University

9:00 am - 10:30 am

EMBED V1 Update

Updates to EMBED V1 including Digital Breast Tomosynthesis (DBT); new image artifacts including implants and regions of interest (ROI); and clinical evaluations.

Rohan Satya Isaac
Rohan Satya Isaac

Emory University

Beatrice Brown-Mulry
Beatrice Brown-Mulry

Emory University

10:30 am - 11:00 am

Break

11:00 am - 12:30 pm

EMBED V2

EMBED V2 overview including breast ultrasound (US), MRI, and whole slide imaging.

Rohan Satya Isaac
Rohan Satya Isaac

Emory University

Hari Trivedi
Hari Trivedi

Emory University

12:30 pm - 1:30 pm

Lunch

1:30 pm - 2:45 pm

Updates to Emory CXR

Overview includes LLM-generated labels, automatic segmentation, CXR preprocessing, and quality control.

Theo Dapamede
Theo Dapamede

Emory University

Frank Li
Frank Li

Emory University

2:45 pm - 3:15 pm

Break

3:15 pm - 4:30 pm

Introducing MRKR

Presenting the MRKR knee radiograph dataset

7:30 am - 4:30 pm

Location - Goizueta Business School 208

1300 Clifton Road, Atlanta, GA 30322

7:30 am - 8:20 am

Continental Breakfast & Registration

8:20 am - 8:30 am

Debrief & House keeping

Review of the day’s activities and important housekeeping notes.

Hari Trivedi
Hari Trivedi

Emory University

Judy Gichoya
Judy Gichoya

Emory University

9:00 am - 10:30 am

Overview: Foundation Models

Introduction to foundation models, understanding tokens and their usage, with demonstrations of zero-shot learning and visual question answering (VQA).

10:30 am - 11:00 am

Break

11:00 am - 12:30 am

Hands-On: Foundation Models

Practical session on embedding extraction and multimodal applications using MedGemma, integrating data from CXR, mammography, and more.

Frank Li
Frank Li

Emory University

12:30 pm - 1:30 pm

Lunch

1:30 pm - 2:45 pm

Foundation Models for Classification, Regression, and Survival Prediction

Foundation Models for Classification, Regression, and Survival Prediction

Theo Dapamede
Theo Dapamede

Emory University

2:45 pm - 3:15 pm

Break

3:45 pm - 4:30 pm

Foundation Models for Segmentation

Frank Li
Frank Li

Emory University

7:30 am - 4:30 pm

Location - Goizueta Business School 208

1300 Clifton Road, Atlanta, GA 30322

7:30 am - 8:20 am

Continental Breakfast & Registration

8:20 am - 8:30 am

Debrief

Review of the day’s activities and important housekeeping notes.

Hari Trivedi
Hari Trivedi

Emory University

Judy Gichoya
Judy Gichoya

Emory University

9:00 am - 10:30 am

Bias in the Age of Foundation and Multimodal Models

Judy Gichoya
Judy Gichoya

Emory University

10:30 pm - 11:00 am

Break

11:00 am - 12:30 am

Explainability and Interpretability

Frank Li
Frank Li

Emory University

12:30 pm - 1:30 pm

Lunch

1:30 pm - 2:45 pm

Introduction to the Common Fund Data Ecosystem

Saptarshi P.
Saptarshi P.

Indiana University Purdue University Indianapolis

2:45 pm - 3:15 pm

Break

3:15 pm - 4:45 pm

Q&A Session (Office Hours)

Teaming for the Datathon

7:30 pm - 4:30 pm

Location - HSRB Rollins Auditorium

1760 Haygood Dr NE, Atlanta, GA 30322

7:30 am - 8:20 am

Continental Breakfast & Registration

8:20 am - 8:30 am

Debrief

Hari Trivedi
Hari Trivedi

Emory University

Judy Gichoya
Judy Gichoya

Emory University

8:30 am - 9:15 am

An overview of bias and unfairness in AI/ML

Prof. Odom

9:15 am - 9:30 am

EMBED - Breast MRI Overview

Hari Trivedi
Hari Trivedi

Emory University

9:30 am - 10:00 am

Break

10:00 am - 12:00 am

EMBED - Breast MRI Model

Classify MRI BPE, select and extract data from 1000 MRIs. Explore data, use pre-trained 3D models, fine-tune, evaluate, and compare performance of 3D classifiers, stacked image classifiers, middle images, and eigen images.

Rohan Satya Isaac
Rohan Satya Isaac

Emory University

12:00 pm - 1:00 pm

Lunch

1:00 pm - 2:00 pm

Radiopathomics

Exploring the intersection of radiology and pathology through advanced data analysis techniques.

2:00 pm - 2:30 pm

Humanizing AI: The Patient's Influence in Reducing Bias in Women's Health

In AI-driven healthcare, especially in women's health and maternal care, it's crucial to recognize that clinicians and patients are key stakeholders directly impacted by these technologies. This presentation will highlight the importance of considering the human aspect in developing equitable and effective AI tools.

2:30 pm - 3:00 pm

Break

3:00 pm - 3:45 pm

Bias in AI

Examination of biases present in AI models and their implications in healthcare.

3:45 pm - 4:30 pm

AWS SageMaker Workshop

Learn to utilize AWS Sagemaker for building, training, and deploying machine learning models efficiently.

7:15 am - 6:00 pm

Location - HSRB Rollins Auditorium

1760 Haygood Dr NE, Atlanta, GA 30322

7:30 am - 8:30 pm

Continental Breakfast & Registration

8:30 am - 7:30 pm

Datathon - Day 1 - (Detailed Schedule TBA)

Janice Newsome
Janice Newsome

Emory University

Hari Trivedi
Hari Trivedi

Emory University

Judy Gichoya
Judy Gichoya

Emory University

7:15 am - 6:00 pm

Location - School of Medicine (SOM, Room 130)

100 Woodruff Circle, Atlanta, GA 30322

7:15 am - 7:30 am

Datathon - Doors Open

7:30 am - 8:00 am

Continental Breakfast & Registration

7:15 am - 7:30 pm

Datathon - Day 2 - (Detailed Schedule TBA)

7:15 am - 2:30 pm

Location - School of Medicine (SOM, Room 130)

100 Woodruff Circle, Atlanta, GA 30322

7:15 am - 7:30 am

Datathon - Day 2 - Doors Open

7:30 am - 8:00 am

Continental Breakfast

8:00 am - 8:15 pm

Debrief

8:15 am - 11:00 am

Datathon Continues

11:00 am - 11:15 am

Mentoring Session

11:15 am - 12:00 pm

Final Slides & Code Submission

12:00 pm - 1:00 pm

Lunch

1:00 pm - 2:00 pm

Presentations

5 minutes allocated per group for their presentation.

2:00 pm - 2:30 pm

Judging

2:00 pm - 2:30 pm

Wrap Up & Results